conversion

Module Contents

Functions

create_source(→ OmeSliCC.OmeSource.OmeSource)
get_image_info(→ str)
extract_thumbnail(source, params)
convert_image(source, params[, load_chunked])
combine_images(sources, params)
store_tiles(sources, output_filename, params[, ...])
get_source_image(source)
get_source_image_dask(source[, chunk_size])
get_source_image_chunked(source[, chunk_size])
save_image_as_ome_zarr(source, data, output_filename, ...)
save_image_as_zarr(source, data, output_filename, ...)
save_image_as_tiff(source, image, output_filename, ...)
save_tiff(filename, image[, metadata, xml_metadata, ...])

conversion.create_source(source_ref: str, params: dict, omero: OmeSliCC.Omero = None) → OmeSliCC.OmeSource.OmeSource

conversion.get_image_info(source: OmeSliCC.OmeSource.OmeSource) → str

conversion.extract_thumbnail(source: OmeSliCC.OmeSource.OmeSource, params: dict)

conversion.convert_image(source: OmeSliCC.OmeSource.OmeSource, params: dict, load_chunked: bool = False)

conversion.combine_images(sources: list[OmeSliCC.OmeSource.OmeSource], params: dict)

conversion.store_tiles(sources: list[OmeSliCC.OmeSource.OmeSource], output_filename: str, params: dict, composition_metadata: list = [], image_operations: list = [])

conversion.get_source_image(source: OmeSliCC.OmeSource.OmeSource)

conversion.get_source_image_dask(source: OmeSliCC.OmeSource.OmeSource, chunk_size=(10240, 10240))

conversion.get_source_image_chunked(source: OmeSliCC.OmeSource.OmeSource, chunk_size=(10240, 10240))

conversion.save_image_as_ome_zarr(source: OmeSliCC.OmeSource.OmeSource, data: numpy.ndarray, output_filename: str, output_params: dict)

conversion.save_image_as_zarr(source: OmeSliCC.OmeSource.OmeSource, data: numpy.ndarray, output_filename: str, output_params: dict)

conversion.save_image_as_tiff(source: OmeSliCC.OmeSource.OmeSource, image: numpy.ndarray, output_filename: str, output_params: dict, ome: bool = False)

conversion.save_tiff(filename: str, image: numpy.ndarray, metadata: dict = None, xml_metadata: str = None, dimension_order: str = 'yxc', resolution: tuple = None, resolution_unit: str = None, tile_size: tuple = None, compression: [] = None, combine_rgb=True, pyramid_sizes_add: list = [])