conversion
==========

.. py:module:: conversion


Functions
---------

.. autoapisummary::

   conversion.create_source
   conversion.get_image_info
   conversion.extract_thumbnail
   conversion.convert_image
   conversion.combine_images
   conversion.store_tiles
   conversion.get_source_image
   conversion.get_source_image_dask
   conversion.get_source_image_chunked
   conversion.save_image_as_ome_zarr
   conversion.save_image_as_zarr
   conversion.save_image_as_tiff
   conversion.save_tiff
   conversion.check_image


Module Contents
---------------

.. py:function:: create_source(source_ref: str, params: dict, omero=None) -> OmeSliCC.OmeSource.OmeSource

.. py:function:: get_image_info(source: OmeSliCC.OmeSource.OmeSource) -> str

.. py:function:: extract_thumbnail(source: OmeSliCC.OmeSource.OmeSource, params: dict)

.. py:function:: convert_image(source: OmeSliCC.OmeSource.OmeSource, params: dict, load_chunked: bool = False)

.. py:function:: combine_images(sources: list[OmeSliCC.OmeSource.OmeSource], params: dict)

.. py:function:: store_tiles(sources: list[OmeSliCC.OmeSource.OmeSource], output_filename: str, params: dict, composition_metadata: list = [], image_operations: list = [])

.. py:function:: get_source_image(source: OmeSliCC.OmeSource.OmeSource)

.. py:function:: get_source_image_dask(source: OmeSliCC.OmeSource.OmeSource, chunk_size=(10240, 10240))

.. py:function:: get_source_image_chunked(source: OmeSliCC.OmeSource.OmeSource, chunk_size=(10240, 10240))

.. py:function:: save_image_as_ome_zarr(source: OmeSliCC.OmeSource.OmeSource, data: numpy.ndarray, output_filename: str, output_params: dict)

.. py:function:: save_image_as_zarr(source: OmeSliCC.OmeSource.OmeSource, data: numpy.ndarray, output_filename: str, output_params: dict, ome: bool = None, v3: bool = False)

.. py:function:: save_image_as_tiff(source: OmeSliCC.OmeSource.OmeSource, image: numpy.ndarray, output_filename: str, output_params: dict, ome: bool = False)

.. py:function:: save_tiff(filename: str, image: numpy.ndarray, metadata: dict = None, xml_metadata: str = None, dimension_order: str = 'yxc', resolution: tuple = None, resolution_unit: str = None, tile_size: tuple = None, compression: [] = None, combine_rgb=True, pyramid_sizes_add: list = [])

.. py:function:: check_image(source, image, converted_filename)