BioSource

Attributes

javabridge_open

Classes

BioSource

bioformats compatible image source

Functions

open_javabridge()
close_javabridge()

Module Contents

class BioSource.BioSource(filename: str, source_pixel_size: list = None, target_pixel_size: list = None, source_info_required: bool = False)

Bases: OmeSliCC.OmeSource.OmeSource

bioformats compatible image source

filename: str

original filename

indexes: list

list of relevant series indexes

bio_ome_metadata

metadata

reader

is_rgb

dimension_order = 'yx'

_find_metadata()

_asarray_level(level: int, **slicing) → numpy.ndarray

close()

BioSource.javabridge_open = False

BioSource.open_javabridge()

BioSource.close_javabridge()