BioSource
=========

.. py:module:: BioSource


Attributes
----------

.. autoapisummary::

   BioSource.javabridge_open


Classes
-------

.. autoapisummary::

   BioSource.BioSource


Functions
---------

.. autoapisummary::

   BioSource.open_javabridge
   BioSource.close_javabridge


Module Contents
---------------

.. py:class:: BioSource(filename: str, source_pixel_size: list = None, target_pixel_size: list = None, source_info_required: bool = False)

   Bases: :py:obj:`OmeSliCC.OmeSource.OmeSource`


   bioformats compatible image source


   .. py:attribute:: filename
      :type:  str

      original filename



   .. py:attribute:: indexes
      :type:  list

      list of relevant series indexes



   .. py:attribute:: bio_ome_metadata


   .. py:attribute:: metadata


   .. py:attribute:: reader


   .. py:attribute:: is_rgb


   .. py:attribute:: dimension_order
      :value: 'yx'



   .. py:method:: _find_metadata()


   .. py:method:: _asarray_level(level: int, **slicing) -> numpy.ndarray


   .. py:method:: close()


.. py:data:: javabridge_open
   :value: False


.. py:function:: open_javabridge()

.. py:function:: close_javabridge()